Maul takes Savage as his apprentice and together they set out to gather an army. Their attempt to recruit Hondo Ohnaka and his pirates is interrupted by Jedi Council members Obi-Wan Kenobi and Adi Gallia.

By a request from Lux Bonteri, Anakin, Obi-Wan, Ahsoka and Rex travel to Onderon to help train a group of rebels so they can take back the capital city of Iziz from the Separatists.

The Jedi and Rex return to Coruscant and leave Ahsoka in charge of supervising the Onderon Rebels as they carry out a series of strikes in the capital.

The Onderon Rebels attempt to rescue former King Dendup before he is executed.

The people of Onderon have decided to revolt against the Separatists, leading to a full scale revolt between the Rebels and Battle Droids.

Ahsoka escorts a group of younglings to Ilum where they meet with Yoda and seek out the Kaiburr crystals needed to build their own lightsabers.

As the six younglings prepare to construct their lightsabers, their training vessel Crucible is attacked by Hondo Ohnaka and his pirates.

Hondo has failed to capture the Kaiburr crystals, but does hold Ahsoka as a prisoner. The younglings form a plan to infiltrate the pirate hideout on Florrum.

General Grievous leads an attack on Hondo Ohnaka's base, forcing the pirates to form a temporary alliance with Ahsoka and the Jedi younglings.

R2-D2 joins a team of Republic Droids known as D-Squad, led by Colonel Gascon. Their mission: to steal an encryption module from a Separatist dreadnought.

D-Squad has obtained their mission objective, but crash-land on a desolate planet after a run-in with comets.

Colonel Gascon and the five droids of D-Squad have arrived at the remote town of Pons Ora on the planet Abafar and find a clone commando suffering from amnesia.

Finally on their way back to Republic space, D-Squad uncovers a Separatist plan involving a sabotaged Jedi cruiser.

Darth Maul and Savage Opress join forces with the Death Watch and together they recruit the Black Sun and Hutt crime lords to form the Shadow Collective.

The Sith brothers and their criminal allies attack Mandalore and the Death Watch pretends to defeat them, causing the gullible people to choose Pre Vizla's rule over Duchess Satine's.

Darth Maul has taken over leadership of Death Watch. Though the Jedi cannot officially interfere, Obi-Wan Kenobi travels to Mandalore to rescue Satine.

Anakin and Ahsoka are tasked to investigate a bombing at the Jedi Temple since they were two of the few Jedi off-planet at the time it occurred.

When the suspect of the Temple bombing is murdered in her cell, Ahsoka suddenly finds herself framed and on the run from the Republic military.

Ahsoka Tano is on the run and hiding in the criminal underworld of Coruscant. She strikes up an unlikely alliance with a former enemy turned bounty hunter.

Ahsoka is put on trial, first by the Jedi Council and then faces the Galactic Senate itself. Meanwhile Anakin goes into the underworld searching for a way to prove his Padawan's innocence.